Changelog¶

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, with an added List of PRs section and links to the relevant PRs on the individal updates. This project adheres to Semantic Versioning.

Unreleased¶

Added¶

Changed¶

Fixed¶

Removed¶

List of PRs¶

3.0.1 (2023-09-24)¶

Changed¶

• Bumped mkdocstrings to version 0.17.0 to avoid mkdocstrings error #496.
• Pinned jinja2 to version 3.0.3 to avoid mkdocs_autoref error #496.
• Update github workflows to latest versions #496
• Exit nicely when invalid survey is requested for SkyView contour plot #497

Fixed¶

• Fixed docs build process #496.

List of PRs¶

• #496: fix: Update github workflows to latest versions
• #497: feat: Exit nicely when invalid survey is requested for SkyView contour plot

3.0.0 (2023-09-02)¶

Added¶

• Raise exception when simbad name query returns more names than there are objects queried #490
• Added open_fits function to correctly handle compressed image HDUs #480
• Added epoch 41 #470
• Added warning when querying corrected data #465
• Added epochs 38, 39 and 40 #466
• Added epoch 37 #458
• Added epoch 36 #455
• Added epochs 34 and 35 #454
• Added automatic generation of resource (csvs/pickles) paths #431
• Added SkyCoord pickle functionality (creation, loading and implementation) #431
• Added access to epoch 33 #434
• Added "search_all_fields" option to Query and find_sources, which returns all data available at the source location rather than just that associated with the closest/best field #418
• Added option to specify which dask scheduler to use to Query, PipeRun, PipeAnalysis objects, and argument to find_sources.py #430
• Added access to epoch 32 #429
• Added access to epoch 31 #427
• Added access to epoch 30 #419
• Added access to epoch 27 #414
• Added access to epochs 22, 23, 24, 25, 26, 28 (RACS-high), 29 (RACS-low-2) #406
• Added _validate files to query.Query class to ensure that only accessible data is queried #370
• Added logging to pipeline.PipeRun #383
• Added tools.wise_color_color_plot to create WISE color-color plots #379
• Added access to epoch 21 #351
• Added check for existence of requested data in Query init #346
• Added pylint github action for pull requests and flake8 dev dependency #338.
• Added observing frequency to all fields csv files #311
• Added OBSERVED_EPOCHS variable for epochs that have been observed but not yet released #311
• Added access to epochs up 17, 18, 19 #311
• Added BASE_EPOCHS variable #311
• Added tools.offset_postagestamp_axes which allows users to display postagestamps with offset (rather than absolute) coordinates #315
• Added Dask RuntimeError warning to query.md docs #317
• Added tools for new epoch addition: add datetimes to fits images create fields csv files, create and update MOCs #298

Changed¶

• Changed opening of all fits files to use open_fits function #480
• Changed default behaviour of Image.measure_coord_pixel_values to have img=False #476
• Changed Fields.direction to be loaded from pickle rather than generated at each call #431
• Updated RACS dec limit to +50 #438
• Updated Query._get_epochs to allow lists and ints #421
• Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04 #425
• Changed path generation to allow for image/rms/background files to contain ".conv" #410
• Changed handling of data product generation from epoch-based to index-based #403
• Updated GitHub actions Gr1N/setup-poetry to v7 #385
• Updated numpy to ~1.22.1 #380
• Removed epoch 12 warning #361
• Updated RELEASED_EPOCHS to include epochs 14 and 20 #351
• Enabled access to full TILES data #325
• Allow query epochs to be specified as list #327.
• Changed plot legend to show frequency rather than selavy/forced #311
• General changes throughout to allow observing frequency to propagate through a query #311
• Updated access to field centres csvs to distinguish between low/mid bands #311
• Updated find_sources.py to automatically query all epochs #311
• Updated handling of RACS epochs #311
• Updated default values of query epochs and imsize #311
• Allow users to specify whether to write generated MOCs, and to use arbitrary STMOC #323
• Changed source.Source.make_png to create postagestamps using coordinate offsets #315
• Minor documentation edits #298

Fixed¶

• Exit nicely when users try to use measurement pairs but they do not exist #478
• Ensure that full image data does not persist when creating FITS cutouts from compressed HDUs #483
• Fixed missing RMS measurements for non-detections #476
• Removed duplicates in field matching #472
• Fix read_selavy to force all flux & flux_err values to be positive #463
• Fix planet matching to correctly handle field names with/without 'A' suffix #453
• Correctly handle empty df in Query.init_sources() #453
• Updated VASTMOCS to correctly handle fields with/without 'A' suffix #452
• Updated github pytest workflow to use Gr1N/setup-poetry@v8 #449
• Updated default value of Query.max_sep to 1.5 degrees #440
• Correctly handle show_all_png_cutouts(save=True) file naming #437
• Ensure selected_fields is defined for all field matching cases #435
• Updated Query._get_epochs to exit nicely when no epochs are available #421
• Update match_planet_to_field to handle empty groups #416
• Added corrected_data to Source class to ensure correct image paths are used #412
• Fixed handling of Stokes Q/U/V selavy files #410
• Fixed naming of fits cutout functions #407
• Changed field name handling to correctly convert RACS -> VAST #405
• Fixed variable names in query documentation example #398
• Updated logging in query.py to correctly reference the file type it was dealing with #398
• Fixed handling of empty list of planets in query #390
• Fix bug where cutouts could not be created #389
• Correctly plot integrated flux histograms in eta-V bokeh plots #383
• Fixed handling of negative values in eta-V bokeh plots #383
• Fixed incorrect selavy filenames for EPOCH00 tiles #373
• Fixed search_around_coordinates option in query #365
• Fixed handling of RACS-mid fields #368
• Fixed handling of RACS filenames and epochs #358
• Fixed issue with ncpu exceeding number of unique sources in Query._init_sources #363
• Fixed plot_lightcurve legend creation #345
• Fixed pipeline eta-v matplotlib plot #340
• Fixed pandas dataframe and series append deprecation by using pd.concat #337.
• Fixed metadata for islands queries #328
• Updated missing values in RACS beam info csv file #311

Removed¶

• Removed '#' from get_components dataframe except when it is used in search_around_coordinates queries #365

List of PRs¶

• #490: feat: Raise exception when simbad name query returns more names than there are objects queried
• #478: fix: Account for pipeline runs with no measurement pairs file
• #483: fix: Ensure that full image data does not persist when creating FITS cutouts from compressed HDUs
• #480: feat: Added open_fits function to handle compressed image HDUs
• #476: fix: Fixed missing RMS measurements for non-detections
• #472: fix: Remove duplicates in field matching
• #470: feat: Added epoch 41
• #465: feat: Added warning when querying corrected data
• #466: feat: Added epochs 38, 39 and 40
• #463: fix: Fix read_selavy to force all flux & flux_err values to be positive
• #458: feat: Added epoch 37
• #453: fix: Fix planet matching to correctly handle field names with/without 'A' suffix, and correctly handle empty df in init_sources
• #455: feat: Added epoch 36
• #454: feat: Added epochs 34 and 35
• #452: fix: Updated VASTMOCS to correctly handle fields with/without 'A' suffix
• #431: feat, docs, tests: Store beam centre SkyCoords as serialised objects rather than generating them on the fly
• #449: fix: Updated github pytest workflow to use Gr1N/setup-poetry@v8
• #440: fix: Updated default value of Query.max_sep to 1.5 degrees
• #438: feat: Updated RACS dec limit to +50
• #437: fix: Correctly handle show_all_png_cutouts(save=True) file naming
• #435: fix: Ensure selected_fields is defined for all field matching cases
• #434: feat: Added access to epoch 33
• #418: feat: Added option to return all data at the available position rather than one field per epoch.
• #430: feat: Allow users to specify which dask scheduler to use for multi-processing
• #421: feat, fix, docs: Updated Query._get_epochs to exit nicely when no epochs available & to allow lists and ints to be passed.
• #429: feat: Added access to epoch 32
• #427: feat: Added access to epoch 31
• #425: fix: Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04
• #419: feat: Added access to epoch 30
• #416: fix: Update match_planet_to_field to handle empty groups
• #414: feat: Added access to epoch 27
• #412: fix: Added corrected_data to Source class to ensure correct image paths are used
• #410: fix: Fix handling of Stokes V products and image naming scheme
• #406: feat: Add epochs 22, 23, 24, 25, 26, 28 (RACS-high), 29 (RACS-low-2)
• #407: fix: Fixed naming of fits cutout functions
• #403: feat, docs: Changed data product generation from epoch-based to index-based
• #405: fix: Fix incorrect handling of RACS-named fields
• #370: feat, docs: Add file validation to check what data is available and remove anything that is not available from the query.
• #398: fix, docs: Fix incorrect logging in query.py and incorrect variable names in query documentation
• #390: fix: Update handling of planets to be consistent with regular sources.
• #389: fix: Fix cutout creation bug.
• #385: dep: Update Gr1N/setup-poetry to v7.
• #380: dep: Update numpy to ~1.22.1.
• #379: feat: Add function to create WISE color-color plots.
• #373: fix: Fixed incorrect selavy filenames for RACS tiles
• #365: fix, tests: Fix query search_around_coordinates option.
• #368: fix, docs: Ensure find_fields returns RACS fields.
• #361: feat, docs: remove epoch 12 warning.
• #358: fix: Fix RACS file paths and epoch handling.
• #363: fix: Update dask npartition specification in Query._init_sources call.
• #351: fix, feat: Add epoch 21.
• #346: feat, fix, tests: Check if requested data exists in Query init.
• #345: fix: Fixed plot_lightcurve.
• #338: feat, dep: Added pylint workflow for pull requests.
• #340: fix: Fixed eta-v plot.
• #337: fix: Fixed pandas append deprecation.
• #325: tests, feat: Enabled access to full TILES data.
• #328: fix, docs: Fixed metadata for islands queries.
• #327: feat, docs: Allow query epochs to be specified as list.
• #311: tests, docs, feat: Added multi-frequency handling and small updates.
• #323: feat, tests: New options for MOC generation.
• #315: tests, docs, feat: Use offset, rather than absolute, coordinates for postagestamps.
• #317: docs: Added warning to docs.
• #298: tests, docs, feat: Added tools for new epoch addition.

2.0.0 (2021-10-09)¶

Note Changelog started from PR#273 hence full notes are not available from before this point.

Added¶

• Added tools sub-module consisting of skymap/MOC interface tools #277.
• Added get_supported_epochs function to survey component #294.
• Added support for epoch 13 (formerly epoch 12) #293.
• Added new data files for epoch 12 #293.
• Added epoch 12 warnings for query and moc components in code and docs #293.
• Added pep8speaks config file to project #290.
• Added a method to recalculate the measurement pairs dataframe (two epoch metrics) #290.
• Docs badge on readme #288.
• Added unit testing for the codebase #285.
• Added documentation on tests #285.
• Added github workflow to run pytest on new PRs #285.
• Added documentation using the mkdocs framework #273.

Changed¶

• Minor documentation edits #289.
• Updated survey docs page to reflect previous refactoring #294.
• Changed all former epoch 12 data files to epoch 13 #293.
• Updated vaex-core version to 4.5.0 #290.
• Updated docs dependencies versions to fix notebook pages #288.
• Refactored data loading to use importlib.resources #285.
• Refactored some data loading to be method base #285.
• Moved RELEASED_EPOCHS and ALLOWED_PLANETS to top level import #285.
• Changed docstrings to google format for docs compatibility #273.

Fixed¶

• Fixed docs announcement bar link #289.
• Fixed test_query.py::TestQuery::test_init_failure_base_folder test #291.
• Fixed jsmin dependancy install (2.2.2 -> 3.0.0) #285.
• Remerged docs branch #287.
• Docs branch reverted to avoid squashing to make merge of tests straightforward #286.

Removed¶

• Removed MANIFEST.in file #289.
• Removed deprecated information from the survey docs page #294.
• Removed EpochInfo class from query as no longer used #285.

List of PRs¶

• #289: docs: Minor documentation edits.
• #277: tests, docs, feat, dep: Add skymap utils
• #294: docs, feat: Survey code tidy and docs correction.
• #293: feat: Added EPOCH13 support.
• #290: docs, dep, feat: Added a recalc two epoch metrics method.
• #291: tests: Fixed TestQuery::test_init_failure_base_folder test.
• #288: docs, dep: Updated docs dependencies.
• #285: test, feat, dep: Added codebase unit testing.
• #287: docs, dep: Documentation using mkdocs
• #286: docs, dep: Revert "Documentation using mkdocs (#273)"
• #273: docs, dep: Documentation using mkdocs
• #274: fix: fixing typo in exception
• #270: dep: Changed over dependency management to poetry
• #264: feat: Add negative selavy catalogues
• #258: feat: v2.0.0-rc.6
• #257: fix: Fix lightcurve axist limits for forced fits
• #255: fix: Added if statement to catch os.getenv returning None
• #253: feat: Added filter pipeline run by MOC function
• #251: fix: Check self.pipeline inside write_measurements
• #247: feat, dep: Updated forced photometry to be a dependency
• #246: fix: Fixed vaex two epoch metric analysis
• #244: fix, dep: Fix mocpy dependancy
• #243: fix: Fixed dropping level on empty dataframe and selavy-simple
• #242: dep: Frozen dependancies versions
• #238: feat: Update the example notebooks with pipeline catalogue crossmatching and new features
• #236: feat: Added pipeline sources SkyCoord convenience function
• #235: feat: Added recalc_sources functionality to pipeline
• #232: feat: Give project_dir precedence over environment variable
• #230: feat: Improve plotting capabilities
• #228: fix: Fix fits loc issue
• #224: fix: Changed lightcurve y axis start at 0 by default
• #223: fix: Fixes query checks with scaler SkyCoord entry

v2.0.0-rc.5 (2020-10-20)¶

The release candidate 5 of v2.0.0. This was the release before the changelog was implemented.

List of PRs¶

• #221 feat: Pipeline add 2 epoch Mooley style plotting
• #220 fix: Issue 219 fix source names
• #218 fix: Removed bad fields from epoch 12 csv