Changelog¶

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, with an added List of PRs section and links to the relevant PRs on the individal updates. This project adheres to Semantic Versioning.

3.1.1 (2024-07-30)¶

Added¶

Added 2023 workshop notebook to docs #552

Changed¶

Updated author email addresses #553
Explicitly require setuptools in pyproject.toml #553
Pin mkdocs=1.3.1 #553
Force jinja2==3.0.3 #551

Fixed¶

Temporary fix for pydantic version breaking vaex #553
Downgraded jinja2 to fix bug in docs deployment #551

Removed¶

List of PRs¶

#553: fix, dep: Pin versions to fix dependency issues, update author email addresses
#551: fix, dep: Downgrade jinja2 to fix bug in docs deployment
#552: feat: Add 2023 workshop notebook to docs

3.1.0 (2024-07-26)¶

Added¶

Add epoch 61 #537
Add epochs 58-60 #535
Added extra logging in Query to improve clarity of data selection #515
Added support for post-processed data #515
Added epoch 40 as a base epoch to allow query of full VAST extragalactic fields #522
Added support for epochs 42-51 #522

Changed¶

Convert all Source names to strings #537
Updated README #535
Changed default behaviour to using post-processed TILES data #515

Fixed¶

Fix errors when creating a Source with an int name #537
Fix incorrect warnings when using COMBINED data #538
Fix forced fitting of compressed fits files #534
Fix checking length of HDUl that should have been fixed by #526 #528
Disable auto-scaling for show_png_cutout to allow users to specify the scaling #527
Fix open_fits handling of unprocessed files #526
Update open_fits to check HDU list contents rather than the file extension #524

Removed¶

List of PRs¶

#537: fix: Convert all Source names to strings
#538: fix: Fix incorrect warnings when using COMBINED data
#537: feat: Add epoch 61
#535: feat: Add epochs 58-60 and updated README
#534: fix: Fix forced fitting of compressed fits files
#515: fix, docs, feat: Support post-procesed data, make it the default and improve clarity of what data has been selected in a query.
#528: fix: Fix checking length of HDUl that should have been fixed by #526
#527: fix: Disable auto-scaling for show_png_cutout to allow users to specify the scaling
#526: fix: Fix open_fits handling of unprocessed files
#524: fix: Update open_fits to check HDU list contents rather than the file extension
#522: fix, feat: Add support for extrgalactic queries and epochs 42-51

3.0.1 (2023-09-24)¶

Changed¶

Bumped mkdocstrings to version 0.17.0 to avoid mkdocstrings error #496.
Pinned jinja2 to version 3.0.3 to avoid mkdocs_autoref error #496.
Update github workflows to latest versions #496
Exit nicely when invalid survey is requested for SkyView contour plot #497

Fixed¶

Fixed docs build process #496.

List of PRs¶

#496: fix: Update github workflows to latest versions
#497: feat: Exit nicely when invalid survey is requested for SkyView contour plot

3.0.0 (2023-09-02)¶

Added¶

Raise exception when simbad name query returns more names than there are objects queried #490
Added open_fits function to correctly handle compressed image HDUs #480
Added epoch 41 #470
Added warning when querying corrected data #465
Added epochs 38, 39 and 40 #466
Added epoch 37 #458
Added epoch 36 #455
Added epochs 34 and 35 #454
Added automatic generation of resource (csvs/pickles) paths #431
Added SkyCoord pickle functionality (creation, loading and implementation) #431
Added access to epoch 33 #434
Added "search_all_fields" option to Query and find_sources, which returns all data available at the source location rather than just that associated with the closest/best field #418
Added option to specify which dask scheduler to use to Query, PipeRun, PipeAnalysis objects, and argument to find_sources.py #430
Added access to epoch 32 #429
Added access to epoch 31 #427
Added access to epoch 30 #419
Added access to epoch 27 #414
Added access to epochs 22, 23, 24, 25, 26, 28 (RACS-high), 29 (RACS-low-2) #406
Added _validate files to query.Query class to ensure that only accessible data is queried #370
Added logging to pipeline.PipeRun #383
Added tools.wise_color_color_plot to create WISE color-color plots #379
Added access to epoch 21 #351
Added check for existence of requested data in Query init #346
Added pylint github action for pull requests and flake8 dev dependency #338.
Added observing frequency to all fields csv files #311
Added OBSERVED_EPOCHS variable for epochs that have been observed but not yet released #311
Added access to epochs up 17, 18, 19 #311
Added BASE_EPOCHS variable #311
Added tools.offset_postagestamp_axes which allows users to display postagestamps with offset (rather than absolute) coordinates #315
Added Dask RuntimeError warning to query.md docs #317
Added tools for new epoch addition: add datetimes to fits images create fields csv files, create and update MOCs #298

Changed¶

Changed opening of all fits files to use open_fits function #480
Changed default behaviour of Image.measure_coord_pixel_values to have img=False #476
Changed Fields.direction to be loaded from pickle rather than generated at each call #431
Updated RACS dec limit to +50 #438
Updated Query._get_epochs to allow lists and ints #421
Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04 #425
Changed path generation to allow for image/rms/background files to contain ".conv" #410
Changed handling of data product generation from epoch-based to index-based #403
Updated GitHub actions Gr1N/setup-poetry to v7 #385
Updated numpy to ~1.22.1 #380
Removed epoch 12 warning #361
Updated RELEASED_EPOCHS to include epochs 14 and 20 #351
Enabled access to full TILES data #325
Allow query epochs to be specified as list #327.
Changed plot legend to show frequency rather than selavy/forced #311
General changes throughout to allow observing frequency to propagate through a query #311
Updated access to field centres csvs to distinguish between low/mid bands #311
Updated find_sources.py to automatically query all epochs #311
Updated handling of RACS epochs #311
Updated default values of query epochs and imsize #311
Allow users to specify whether to write generated MOCs, and to use arbitrary STMOC #323
Changed source.Source.make_png to create postagestamps using coordinate offsets #315
Minor documentation edits #298

Fixed¶

Exit nicely when users try to use measurement pairs but they do not exist #478
Ensure that full image data does not persist when creating FITS cutouts from compressed HDUs #483
Fixed missing RMS measurements for non-detections #476
Removed duplicates in field matching #472
Fix read_selavy to force all flux & flux_err values to be positive #463
Fix planet matching to correctly handle field names with/without 'A' suffix #453
Correctly handle empty df in Query.init_sources() #453
Updated VASTMOCS to correctly handle fields with/without 'A' suffix #452
Updated github pytest workflow to use Gr1N/setup-poetry@v8 #449
Updated default value of Query.max_sep to 1.5 degrees #440
Correctly handle show_all_png_cutouts(save=True) file naming #437
Ensure selected_fields is defined for all field matching cases #435
Updated Query._get_epochs to exit nicely when no epochs are available #421
Update match_planet_to_field to handle empty groups #416
Added corrected_data to Source class to ensure correct image paths are used #412
Fixed handling of Stokes Q/U/V selavy files #410
Fixed naming of fits cutout functions #407
Changed field name handling to correctly convert RACS -> VAST #405
Fixed variable names in query documentation example #398
Updated logging in query.py to correctly reference the file type it was dealing with #398
Fixed handling of empty list of planets in query #390
Fix bug where cutouts could not be created #389
Correctly plot integrated flux histograms in eta-V bokeh plots #383
Fixed handling of negative values in eta-V bokeh plots #383
Fixed incorrect selavy filenames for EPOCH00 tiles #373
Fixed search_around_coordinates option in query #365
Fixed handling of RACS-mid fields #368
Fixed handling of RACS filenames and epochs #358
Fixed issue with ncpu exceeding number of unique sources in Query._init_sources #363
Fixed plot_lightcurve legend creation #345
Fixed pipeline eta-v matplotlib plot #340
Fixed pandas dataframe and series append deprecation by using pd.concat #337.
Fixed metadata for islands queries #328
Updated missing values in RACS beam info csv file #311

Removed¶

Removed '#' from get_components dataframe except when it is used in search_around_coordinates queries #365

List of PRs¶

#490: feat: Raise exception when simbad name query returns more names than there are objects queried
#478: fix: Account for pipeline runs with no measurement pairs file
#483: fix: Ensure that full image data does not persist when creating FITS cutouts from compressed HDUs
#480: feat: Added open_fits function to handle compressed image HDUs
#476: fix: Fixed missing RMS measurements for non-detections
#472: fix: Remove duplicates in field matching
#470: feat: Added epoch 41
#465: feat: Added warning when querying corrected data
#466: feat: Added epochs 38, 39 and 40
#463: fix: Fix read_selavy to force all flux & flux_err values to be positive
#458: feat: Added epoch 37
#453: fix: Fix planet matching to correctly handle field names with/without 'A' suffix, and correctly handle empty df in init_sources
#455: feat: Added epoch 36
#454: feat: Added epochs 34 and 35
#452: fix: Updated VASTMOCS to correctly handle fields with/without 'A' suffix
#431: feat, docs, tests: Store beam centre SkyCoords as serialised objects rather than generating them on the fly
#449: fix: Updated github pytest workflow to use Gr1N/setup-poetry@v8
#440: fix: Updated default value of Query.max_sep to 1.5 degrees
#438: feat: Updated RACS dec limit to +50
#437: fix: Correctly handle show_all_png_cutouts(save=True) file naming
#435: fix: Ensure selected_fields is defined for all field matching cases
#434: feat: Added access to epoch 33
#418: feat: Added option to return all data at the available position rather than one field per epoch.
#430: feat: Allow users to specify which dask scheduler to use for multi-processing
#421: feat, fix, docs: Updated Query._get_epochs to exit nicely when no epochs available & to allow lists and ints to be passed.
#429: feat: Added access to epoch 32
#427: feat: Added access to epoch 31
#425: fix: Bumped pytest and lint github workflow from ubuntu-18.04 -> ubuntu-20.04
#419: feat: Added access to epoch 30
#416: fix: Update match_planet_to_field to handle empty groups
#414: feat: Added access to epoch 27
#412: fix: Added corrected_data to Source class to ensure correct image paths are used
#410: fix: Fix handling of Stokes V products and image naming scheme
#406: feat: Add epochs 22, 23, 24, 25, 26, 28 (RACS-high), 29 (RACS-low-2)
#407: fix: Fixed naming of fits cutout functions
#403: feat, docs: Changed data product generation from epoch-based to index-based
#405: fix: Fix incorrect handling of RACS-named fields
#370: feat, docs: Add file validation to check what data is available and remove anything that is not available from the query.
#398: fix, docs: Fix incorrect logging in query.py and incorrect variable names in query documentation
#390: fix: Update handling of planets to be consistent with regular sources.
#389: fix: Fix cutout creation bug.
#385: dep: Update Gr1N/setup-poetry to v7.
#380: dep: Update numpy to ~1.22.1.
#379: feat: Add function to create WISE color-color plots.
#373: fix: Fixed incorrect selavy filenames for RACS tiles
#365: fix, tests: Fix query search_around_coordinates option.
#368: fix, docs: Ensure find_fields returns RACS fields.
#361: feat, docs: remove epoch 12 warning.
#358: fix: Fix RACS file paths and epoch handling.
#363: fix: Update dask npartition specification in Query._init_sources call.
#351: fix, feat: Add epoch 21.
#346: feat, fix, tests: Check if requested data exists in Query init.
#345: fix: Fixed plot_lightcurve.
#338: feat, dep: Added pylint workflow for pull requests.
#340: fix: Fixed eta-v plot.
#337: fix: Fixed pandas append deprecation.
#325: tests, feat: Enabled access to full TILES data.
#328: fix, docs: Fixed metadata for islands queries.
#327: feat, docs: Allow query epochs to be specified as list.
#311: tests, docs, feat: Added multi-frequency handling and small updates.
#323: feat, tests: New options for MOC generation.
#315: tests, docs, feat: Use offset, rather than absolute, coordinates for postagestamps.
#317: docs: Added warning to docs.
#298: tests, docs, feat: Added tools for new epoch addition.

2.0.0 (2021-10-09)¶

Note Changelog started from PR#273 hence full notes are not available from before this point.

Added¶

Added tools sub-module consisting of skymap/MOC interface tools #277.
Added get_supported_epochs function to survey component #294.
Added support for epoch 13 (formerly epoch 12) #293.
Added new data files for epoch 12 #293.
Added epoch 12 warnings for query and moc components in code and docs #293.
Added pep8speaks config file to project #290.
Added a method to recalculate the measurement pairs dataframe (two epoch metrics) #290.
Docs badge on readme #288.
Added unit testing for the codebase #285.
Added documentation on tests #285.
Added github workflow to run pytest on new PRs #285.
Added documentation using the mkdocs framework #273.

Changed¶

Minor documentation edits #289.
Updated survey docs page to reflect previous refactoring #294.
Changed all former epoch 12 data files to epoch 13 #293.
Updated vaex-core version to 4.5.0 #290.
Updated docs dependencies versions to fix notebook pages #288.
Refactored data loading to use importlib.resources #285.
Refactored some data loading to be method base #285.
Moved RELEASED_EPOCHS and ALLOWED_PLANETS to top level import #285.
Changed docstrings to google format for docs compatibility #273.

Fixed¶

Fixed docs announcement bar link #289.
Fixed test_query.py::TestQuery::test_init_failure_base_folder test #291.
Fixed jsmin dependancy install (2.2.2 -> 3.0.0) #285.
Remerged docs branch #287.
Docs branch reverted to avoid squashing to make merge of tests straightforward #286.

Removed¶

Removed MANIFEST.in file #289.
Removed deprecated information from the survey docs page #294.
Removed EpochInfo class from query as no longer used #285.

List of PRs¶

#289: docs: Minor documentation edits.
#277: tests, docs, feat, dep: Add skymap utils
#294: docs, feat: Survey code tidy and docs correction.
#293: feat: Added EPOCH13 support.
#290: docs, dep, feat: Added a recalc two epoch metrics method.
#291: tests: Fixed TestQuery::test_init_failure_base_folder test.
#288: docs, dep: Updated docs dependencies.
#285: test, feat, dep: Added codebase unit testing.
#287: docs, dep: Documentation using mkdocs
#286: docs, dep: Revert "Documentation using mkdocs (#273)"
#273: docs, dep: Documentation using mkdocs
#274: fix: fixing typo in exception
#270: dep: Changed over dependency management to poetry
#264: feat: Add negative selavy catalogues
#258: feat: v2.0.0-rc.6
#257: fix: Fix lightcurve axist limits for forced fits
#255: fix: Added if statement to catch os.getenv returning None
#253: feat: Added filter pipeline run by MOC function
#251: fix: Check self.pipeline inside write_measurements
#247: feat, dep: Updated forced photometry to be a dependency
#246: fix: Fixed vaex two epoch metric analysis
#244: fix, dep: Fix mocpy dependancy
#243: fix: Fixed dropping level on empty dataframe and selavy-simple
#242: dep: Frozen dependancies versions
#238: feat: Update the example notebooks with pipeline catalogue crossmatching and new features
#236: feat: Added pipeline sources SkyCoord convenience function
#235: feat: Added recalc_sources functionality to pipeline
#232: feat: Give project_dir precedence over environment variable
#230: feat: Improve plotting capabilities
#228: fix: Fix fits loc issue
#224: fix: Changed lightcurve y axis start at 0 by default
#223: fix: Fixes query checks with scaler SkyCoord entry

v2.0.0-rc.5 (2020-10-20)¶

The release candidate 5 of v2.0.0. This was the release before the changelog was implemented.

List of PRs¶

#221 feat: Pipeline add 2 epoch Mooley style plotting
#220 fix: Issue 219 fix source names
#218 fix: Removed bad fields from epoch 12 csv

Last update: July 30, 2024
Created: August 6, 2021